SNP Report

Basic Infomation

Name	rs10878278 dbSNP
Location	chr:12,40653988
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506155	0.93[CHB][hapmap]
rs10784451	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784452	0.84[ASN][1000 genomes]
rs10784532	0.93[CHB][hapmap]
rs10878258	0.80[CHB][hapmap]
rs10878284	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878343	0.93[CHB][hapmap];0.93[ASN][1000 genomes]
rs10878356	0.93[CHB][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes]
rs10878372	0.93[CHB][hapmap];0.96[CHD][hapmap];0.91[MEX][hapmap];0.88[ASN][1000 genomes]
rs11175094	0.87[YRI][hapmap]
rs11175843	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175934	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11175935	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11175958	0.93[CHB][hapmap];0.93[ASN][1000 genomes]
rs11175966	0.93[CHB][hapmap];0.93[ASN][1000 genomes]
rs11176118	0.89[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11176153	0.89[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes]
rs11176418	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs12368229	0.89[CEU][hapmap];0.93[CHB][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs17444223	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs17444730	0.93[CHB][hapmap]
rs17462055	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs2101144	0.87[YRI][hapmap]
rs2162471	0.89[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2723264	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7132187	0.93[CHB][hapmap]
rs7134379	0.80[CHB][hapmap];0.89[CHD][hapmap]
rs7137173	0.89[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs715403	0.84[CHB][hapmap]
rs7302006	0.85[YRI][hapmap]
rs7303525	0.89[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs7311850	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs7966550	0.93[CHB][hapmap];0.92[CHD][hapmap];0.91[ASN][1000 genomes]
rs7969677	0.93[CHB][hapmap];1.00[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)