SNP Report

Basic Infomation

Name	rs10878356 dbSNP
Location	chr:12,40709957
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506155	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10784451	1.00[CHB][hapmap];0.83[MEX][hapmap];0.91[ASN][1000 genomes]
rs10784532	1.00[CHB][hapmap]
rs10878258	0.87[CHB][hapmap]
rs10878278	0.93[CHB][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes]
rs10878284	0.93[ASN][1000 genomes]
rs10878343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878372	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11175843	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11175934	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11175935	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11175958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176118	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11176153	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11176418	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12368229	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17444223	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17444730	1.00[CHB][hapmap]
rs17462055	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2162471	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2723264	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7132187	1.00[CHB][hapmap]
rs7134379	0.87[CHB][hapmap]
rs7137173	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.84[ASN][1000 genomes]
rs715403	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs7303525	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7311850	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7966550	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7969677	1.00[CHB][hapmap];0.87[MKK][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)