SNP Report
Basic Infomation
| Name | rs10878284 dbSNP |
|---|---|
| Location | chr:12,40658205 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10784451 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10784452 | 0.84[ASN][1000 genomes] |
| rs10878278 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10878343 | 0.93[ASN][1000 genomes] |
| rs10878356 | 0.93[ASN][1000 genomes] |
| rs10878372 | 0.88[ASN][1000 genomes] |
| rs11175843 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11175934 | 0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11175935 | 0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11175958 | 0.93[ASN][1000 genomes] |
| rs11175966 | 0.93[ASN][1000 genomes] |
| rs11176118 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11176153 | 0.80[EUR][1000 genomes] |
| rs2162471 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2723264 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7303525 | 0.80[EUR][1000 genomes] |
| rs7966550 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014