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rVarBase
SNP Report
Basic Infomation
Name
rs11175985  
dbSNP
Location
chr:12,40707278
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10784599
1.00[ASW][hapmap];1.00[JPT][hapmap]
rs11176143
0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12370083
1.00[ASW][hapmap];1.00[JPT][hapmap]
rs3747892
0.92[ASN][1000 genomes]
rs7966550
1.00[ASW][hapmap]
rs7969677
1.00[ASW][hapmap]
rSNP related genes
Symbol
Regulation type
LRRK2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
CDCP2
SCAN
LOC400750
SCAN
LOC645294
SCAN
LOC400013
SCAN
OSTCL
SCAN