SNP Report
Basic Infomation
| Name | rs7098573 dbSNP |
|---|---|
| Location | chr:10,75580014 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10740418 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.94[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10824036 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11000765 | 1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11000785 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11000787 | 1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1134777 | 0.87[EUR][1000 genomes] |
| rs12256103 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12413039 | 0.86[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12783161 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2227551 | 0.90[CEU][hapmap] |
| rs2242256 | 0.86[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2242257 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2242258 | 0.86[CEU][hapmap];0.83[MEX][hapmap] |
| rs2243610 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes] |
| rs2271271 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2459449 | 0.86[CEU][hapmap] |
| rs2633298 | 0.81[CEU][hapmap] |
| rs2633309 | 0.81[CEU][hapmap] |
| rs2664284 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2675676 | 0.90[CEU][hapmap] |
| rs2675677 | 0.81[CEU][hapmap] |
| rs2688611 | 0.90[CEU][hapmap] |
| rs2688617 | 0.90[CEU][hapmap] |
| rs2688626 | 0.86[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3812637 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3849968 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3849969 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.96[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3870402 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3911887 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4691 | 0.86[CEU][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs4746143 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4746148 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CAMK2G | Proximal transcriptional regulation |
| CHCHD1 | Distal transcriptional regulation |
| NDST2 | Distal transcriptional regulation |
| ENSG00000243698 | Distal transcriptional regulation |
| ENSG00000224195 | Distal transcriptional regulation |
| CAMK2G | Distal transcriptional regulation |
| FUT11 | Distal transcriptional regulation |
| ENSG00000267964 | Distal transcriptional regulation |
| CAMK2G | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014