SNP Report

Basic Infomation

Name	rs2675676 dbSNP
Location	chr:10,75648287
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10128262	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10128302	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10740418	0.90[CEU][hapmap];0.83[MEX][hapmap]
rs10824040	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10824041	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10824043	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10824044	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11000765	0.90[CEU][hapmap]
rs11000785	0.90[CEU][hapmap];0.83[MEX][hapmap]
rs11000787	0.90[CEU][hapmap]
rs11000804	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12256103	0.90[CEU][hapmap];0.83[MEX][hapmap]
rs2227551	1.00[CEU][hapmap];0.87[MEX][hapmap]
rs2227552	0.84[EUR][1000 genomes]
rs2227560	0.82[EUR][1000 genomes]
rs2242256	0.95[CEU][hapmap];0.83[AMR][1000 genomes]
rs2242257	0.83[AMR][1000 genomes]
rs2242258	0.95[CEU][hapmap];0.83[MEX][hapmap]
rs2243610	0.95[CEU][hapmap];0.87[MEX][hapmap]
rs2271271	0.90[CEU][hapmap];0.83[MEX][hapmap]
rs2459449	0.95[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.84[EUR][1000 genomes]
rs2461864	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2633298	0.90[CEU][hapmap]
rs2633302	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2633303	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2633309	0.90[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2633316	0.84[EUR][1000 genomes]
rs2633322	0.82[TSI][hapmap]
rs2675667	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs2675675	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2675677	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2688611	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2688617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688620	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs2688624	0.80[CEU][hapmap]
rs2688626	0.95[CEU][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs3812637	0.90[CEU][hapmap]
rs3849969	0.90[CEU][hapmap];0.82[MEX][hapmap]
rs3911887	0.90[CEU][hapmap];0.83[MEX][hapmap]
rs4746143	0.90[CEU][hapmap];0.83[MEX][hapmap]
rs4746148	0.90[CEU][hapmap];0.83[MEX][hapmap]
rs7098573	0.90[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
CAMK2G	Distal transcriptional regulation
ZSWIM8	Distal transcriptional regulation
VCL	Distal transcriptional regulation
PLAU	Distal transcriptional regulation
C10orf55	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
SCRN2	SCAN
DUSP8	Pritchard
DDIT4	SCAN