SNP Report

Basic Infomation

Name	rs11000787 dbSNP
Location	chr:10,75584383
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10740418	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10824036	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11000765	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11000785	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1134777	0.87[EUR][1000 genomes]
rs12256103	1.00[CEU][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12413039	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12783161	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2227551	0.90[CEU][hapmap]
rs2242256	0.81[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2242257	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2242258	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs2243610	0.85[CEU][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes]
rs2271271	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2459449	0.85[CEU][hapmap]
rs2633298	0.82[CEU][hapmap]
rs2633309	0.82[CEU][hapmap]
rs2664284	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2675676	0.90[CEU][hapmap]
rs2675677	0.80[CEU][hapmap]
rs2688611	0.91[CEU][hapmap]
rs2688617	0.91[CEU][hapmap]
rs2688626	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3812637	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3849968	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3849969	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3870402	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3911887	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4691	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs4746143	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4746148	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7098573	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CAMK2G	Distal transcriptional regulation
CAMK2G	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)