SNP Report

Basic Infomation

Name	rs12783161 dbSNP
Location	chr:10,75572201
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10740418	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10824036	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11000765	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11000785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11000787	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1134777	0.88[EUR][1000 genomes]
rs12256103	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12413039	0.87[EUR][1000 genomes]
rs2242256	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2242257	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2242258	0.81[AMR][1000 genomes]
rs2243610	0.88[AMR][1000 genomes]
rs2271271	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664284	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2688626	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3812637	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3849968	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3849969	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3870401	0.81[EUR][1000 genomes]
rs3870402	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3911887	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4691	0.88[EUR][1000 genomes]
rs4746143	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4746148	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7098573	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
NDST2	Proximal transcriptional regulation
ENSG00000224195	Proximal transcriptional regulation
ENSG00000243698	Proximal transcriptional regulation
CAMK2G	Distal transcriptional regulation
PLAU	Distal transcriptional regulation
FUT11	Distal transcriptional regulation
ENSG00000267964	Distal transcriptional regulation
ENSG00000253045	Distal transcriptional regulation
ZSWIM8	Distal transcriptional regulation
ENSG00000236370	Distal transcriptional regulation
NDST2	Distal transcriptional regulation
CHCHD1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)