SNP Report
Basic Infomation
| Name | rs2243610 dbSNP |
|---|---|
| Location | chr:10,75601653 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10740418 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.96[MEX][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs10824036 | 0.83[AMR][1000 genomes] |
| rs11000765 | 0.86[CEU][hapmap];0.86[AMR][1000 genomes] |
| rs11000785 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.96[MEX][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes] |
| rs11000787 | 0.85[CEU][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes] |
| rs12256103 | 0.89[ASW][hapmap];0.86[CEU][hapmap];0.96[MEX][hapmap];0.84[AMR][1000 genomes] |
| rs12783161 | 0.88[AMR][1000 genomes] |
| rs2227551 | 0.95[CEU][hapmap];0.83[MEX][hapmap] |
| rs2242256 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2242257 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2242258 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2271271 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.96[MEX][hapmap];0.87[AMR][1000 genomes] |
| rs2459449 | 0.90[CEU][hapmap];0.83[MEX][hapmap] |
| rs2461867 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2633298 | 0.86[CEU][hapmap] |
| rs2633309 | 0.86[CEU][hapmap] |
| rs2664284 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2675676 | 0.95[CEU][hapmap];0.87[MEX][hapmap] |
| rs2675677 | 0.86[CEU][hapmap];0.80[MEX][hapmap] |
| rs2688611 | 0.95[CEU][hapmap] |
| rs2688617 | 0.95[CEU][hapmap] |
| rs2688626 | 1.00[CEU][hapmap];0.87[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3812637 | 0.86[CEU][hapmap];0.87[AMR][1000 genomes] |
| rs3849969 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.96[MEX][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs3911887 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.96[MEX][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs4746143 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.96[MEX][hapmap];0.82[YRI][hapmap] |
| rs4746148 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.96[MEX][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs7098573 | 0.94[ASW][hapmap];0.86[CEU][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CAMK2G | Distal transcriptional regulation |
| ENSG00000229990 | RNA binding protein mediated regulation |
| CAMK2G | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014