SNP Report
Basic Infomation
| Name | rs2633298 dbSNP |
|---|---|
| Location | chr:10,75666339 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10740418 | 0.81[CEU][hapmap] |
| rs11000765 | 0.82[CEU][hapmap] |
| rs11000785 | 0.81[CEU][hapmap] |
| rs11000787 | 0.82[CEU][hapmap] |
| rs12256103 | 0.81[CEU][hapmap] |
| rs2227551 | 0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2227552 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2227560 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2242256 | 0.82[CEU][hapmap] |
| rs2242258 | 0.86[CEU][hapmap] |
| rs2243610 | 0.86[CEU][hapmap] |
| rs2271271 | 0.81[CEU][hapmap] |
| rs2459449 | 0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2633309 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2675676 | 0.90[CEU][hapmap] |
| rs2675677 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2688611 | 0.91[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs2688617 | 0.91[CEU][hapmap] |
| rs2688626 | 0.86[CEU][hapmap] |
| rs3812637 | 0.82[CEU][hapmap] |
| rs3849969 | 0.81[CEU][hapmap] |
| rs3911887 | 0.81[CEU][hapmap] |
| rs4746143 | 0.81[CEU][hapmap] |
| rs4746148 | 0.81[CEU][hapmap] |
| rs7098573 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLAU | Proximal transcriptional regulation |
| NDST2 | Distal transcriptional regulation |
| ENSG00000243698 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014