SNP Report
Basic Infomation
| Name | rs2227552 dbSNP |
|---|---|
| Location | chr:10,75669319 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128262 | 0.83[EUR][1000 genomes] |
| rs10128302 | 0.83[EUR][1000 genomes] |
| rs10824040 | 0.81[EUR][1000 genomes] |
| rs10824044 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11000804 | 0.81[AMR][1000 genomes] |
| rs2227551 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2227560 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2227564 | 0.85[EUR][1000 genomes] |
| rs2459449 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2461864 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2633298 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2633303 | 0.83[EUR][1000 genomes] |
| rs2633316 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2633322 | 0.87[ASN][1000 genomes] |
| rs2675667 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2675675 | 0.84[EUR][1000 genomes] |
| rs2675676 | 0.84[EUR][1000 genomes] |
| rs2688611 | 0.85[EUR][1000 genomes] |
| rs2688617 | 0.84[EUR][1000 genomes] |
| rs2688620 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2688624 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLAU | Proximal transcriptional regulation |
| VCL | Distal transcriptional regulation |
| AP3M1 | Distal transcriptional regulation |
| ADK | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014