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rVarBase
SNP Report
Basic Infomation
Name
rs2227564  
dbSNP
Location
chr:10,75673101
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11000811
0.86[ASN][1000 genomes]
rs2227551
0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs2227552
0.85[EUR][1000 genomes]
rs2227560
0.87[EUR][1000 genomes]
rs2459449
0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs2688620
0.87[CEU][hapmap]
rSNP related genes
Symbol
Regulation type
PLAU
Distal transcriptional regulation
PLAU
RNA binding protein mediated regulation
C10orf55
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
DDIT4
SCAN
PRF1
SCAN