SNP Report
Basic Infomation
| Name | rs2633322 dbSNP |
|---|---|
| Location | chr:10,75693932 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2227551 | 0.82[GIH][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes] |
| rs2227552 | 0.87[ASN][1000 genomes] |
| rs2227560 | 0.88[ASN][1000 genomes] |
| rs2459449 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[ASN][1000 genomes] |
| rs2633316 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2633320 | 1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2675667 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2675676 | 0.82[TSI][hapmap] |
| rs2688611 | 0.80[EUR][1000 genomes] |
| rs2688620 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2688624 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CAMK2G | Distal transcriptional regulation |
| C10orf55 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014