SNP Report

Basic Infomation

Name	rs2688617 dbSNP
Location	chr:10,75646147
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10128262	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10128302	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10740418	0.90[CEU][hapmap]
rs10824040	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10824041	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10824043	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10824044	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11000765	0.91[CEU][hapmap]
rs11000785	0.90[CEU][hapmap]
rs11000787	0.91[CEU][hapmap]
rs11000804	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12256103	0.90[CEU][hapmap]
rs2227551	1.00[CEU][hapmap]
rs2227552	0.84[EUR][1000 genomes]
rs2227560	0.82[EUR][1000 genomes]
rs2242256	0.91[CEU][hapmap];0.83[AMR][1000 genomes]
rs2242257	0.83[AMR][1000 genomes]
rs2242258	0.95[CEU][hapmap]
rs2243610	0.95[CEU][hapmap]
rs2271271	0.90[CEU][hapmap]
rs2459449	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs2461864	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2633298	0.91[CEU][hapmap]
rs2633302	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2633303	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2633309	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2633316	0.84[EUR][1000 genomes]
rs2675667	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs2675675	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2675676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675677	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2688611	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2688620	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2688624	0.81[CEU][hapmap]
rs2688626	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs3812637	0.91[CEU][hapmap]
rs3849969	0.90[CEU][hapmap]
rs3911887	0.90[CEU][hapmap]
rs4746143	0.90[CEU][hapmap]
rs4746148	0.90[CEU][hapmap]
rs7098573	0.90[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
VCL	Distal transcriptional regulation
CAMK2G	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)