SNP Report
Basic Infomation
| Name | rs2664284 dbSNP |
|---|---|
| Location | chr:10,75586174 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10740418 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10824036 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs11000765 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11000785 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11000787 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12256103 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12783161 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2242256 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2242257 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2242258 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2243610 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2271271 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2461867 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2688626 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3812637 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3849968 | 0.82[AMR][1000 genomes] |
| rs3849969 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs3870402 | 0.83[AMR][1000 genomes] |
| rs3911887 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4746143 | 0.83[AMR][1000 genomes] |
| rs4746148 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7098573 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CAMK2G | Distal transcriptional regulation |
| CAMK2G | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014