SNP Report
Basic Infomation
| Name | rs3849968 dbSNP |
|---|---|
| Location | chr:10,75483592 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10740418 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10824036 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11000765 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11000785 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11000787 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1134777 | 0.81[EUR][1000 genomes] |
| rs1135745 | 0.94[ASN][1000 genomes] |
| rs12256103 | 0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12413039 | 0.82[EUR][1000 genomes] |
| rs12783161 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2242256 | 0.81[AMR][1000 genomes] |
| rs2242257 | 0.81[AMR][1000 genomes] |
| rs2271271 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2664284 | 0.82[AMR][1000 genomes] |
| rs28417886 | 0.84[ASN][1000 genomes] |
| rs3812637 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3849969 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3870401 | 0.87[EUR][1000 genomes] |
| rs3870402 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3911887 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4691 | 0.81[EUR][1000 genomes] |
| rs4746143 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4746148 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7098573 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7903666 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000242288 | Distal transcriptional regulation |
| BMS1P4 | Distal transcriptional regulation |
| GLUD1P3 | Distal transcriptional regulation |
| DUSP8P5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014