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rVarBase
SNP Report
Basic Infomation
Name
rs28417886  
dbSNP
Location
chr:10,75446665
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11000765
0.81[ASN][1000 genomes]
rs1135745
0.87[ASN][1000 genomes]
rs3849968
0.84[ASN][1000 genomes]
rs3870402
0.86[ASN][1000 genomes]
rs4746143
0.84[ASN][1000 genomes]
rs7903666
0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000242288
RNA binding protein mediated regulation
AGAP5
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)