SNP Report
Basic Infomation
| Name | rs12413039 dbSNP |
|---|---|
| Location | chr:10,75524759 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10740418 | 0.86[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs10824036 | 0.81[EUR][1000 genomes] |
| rs11000756 | 0.91[ASN][1000 genomes] |
| rs11000765 | 0.86[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11000785 | 0.86[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs11000787 | 0.85[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs1134777 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12256103 | 0.86[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12783161 | 0.87[EUR][1000 genomes] |
| rs2271271 | 0.86[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs3812637 | 0.86[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs3849968 | 0.82[EUR][1000 genomes] |
| rs3849969 | 0.86[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs3870401 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3870402 | 0.82[EUR][1000 genomes] |
| rs3911887 | 0.86[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs4691 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4746143 | 0.86[CEU][hapmap];0.81[GIH][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs4746148 | 0.86[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs7098573 | 0.86[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SEC24C | Proximal transcriptional regulation |
| SEC24C | Distal transcriptional regulation |
| CHCHD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014