SNP Report
Basic Infomation
| Name | rs6073825 dbSNP |
|---|---|
| Location | chr:20,44258217 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696501 | 0.83[MEX][hapmap] |
| rs11696685 | 0.84[ASN][1000 genomes] |
| rs1487319 | 0.82[ASN][1000 genomes] |
| rs1487325 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2072974 | 0.82[ASN][1000 genomes] |
| rs2171371 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2227290 | 0.87[MEX][hapmap] |
| rs2235584 | 0.87[MEX][hapmap] |
| rs2272961 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4812909 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4812943 | 0.93[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs6017637 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6065823 | 0.85[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap] |
| rs6065852 | 0.82[ASN][1000 genomes] |
| rs6065859 | 0.82[ASN][1000 genomes] |
| rs6065863 | 0.82[ASN][1000 genomes] |
| rs6073768 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs6073784 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6073823 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6073831 | 0.81[ASN][1000 genomes] |
| rs6073833 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6073834 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6073846 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs6073849 | 0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6073850 | 0.82[ASN][1000 genomes] |
| rs6073862 | 0.85[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs6094184 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6104252 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6104257 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6104273 | 0.82[ASN][1000 genomes] |
| rs6104285 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes] |
| rs6104291 | 0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs6104293 | 0.85[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs6104298 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs6124722 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6130865 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6130867 | 0.84[GIH][hapmap] |
| rs6130877 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6130897 | 0.83[ASW][hapmap];0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap] |
| rs714595 | 0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC10A | Proximal transcriptional regulation |
| WFDC9 | RNA binding protein mediated regulation |
| WFDC10A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014