SNP Report
Basic Infomation
| Name | rs6073768 dbSNP |
|---|---|
| Location | chr:20,44130146 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696176 | 0.95[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11696501 | 0.91[MEX][hapmap] |
| rs1487325 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs2171371 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs2227290 | 0.87[MEX][hapmap] |
| rs2235584 | 0.87[MEX][hapmap] |
| rs2272961 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs4812909 | 1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6065823 | 0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6065827 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6073759 | 0.95[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6073774 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6073784 | 0.94[JPT][hapmap];0.85[AMR][1000 genomes] |
| rs6073825 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs6073833 | 0.95[JPT][hapmap] |
| rs6073834 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs6073846 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs6073849 | 0.95[JPT][hapmap] |
| rs6104285 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap] |
| rs6104291 | 0.95[JPT][hapmap] |
| rs6104293 | 0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs6104298 | 0.95[JPT][hapmap] |
| rs6130846 | 0.94[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6130855 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6130865 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6130867 | 1.00[ASW][hapmap] |
| rs6130897 | 0.84[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs8117019 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014