SNP Report
Basic Infomation
| Name | rs11696501 dbSNP |
|---|---|
| Location | chr:20,44124523 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1487325 | 0.83[MEX][hapmap] |
| rs16990233 | 0.82[YRI][hapmap] |
| rs16990235 | 0.82[YRI][hapmap] |
| rs16990238 | 0.82[YRI][hapmap] |
| rs2171371 | 0.83[MEX][hapmap] |
| rs2227290 | 0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.80[ASN][1000 genomes] |
| rs2235584 | 0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.80[ASN][1000 genomes] |
| rs2272961 | 0.83[MEX][hapmap] |
| rs6032241 | 0.82[YRI][hapmap] |
| rs6032243 | 0.88[YRI][hapmap] |
| rs6032244 | 0.88[YRI][hapmap] |
| rs6065823 | 0.93[CEU][hapmap];0.87[MEX][hapmap] |
| rs6065825 | 0.86[EUR][1000 genomes] |
| rs6073768 | 0.91[MEX][hapmap] |
| rs6073825 | 0.83[MEX][hapmap] |
| rs6073834 | 0.83[MEX][hapmap] |
| rs6073846 | 0.83[MEX][hapmap] |
| rs6104285 | 0.83[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPL5P2 | Proximal transcriptional regulation |
| RPL5P2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014