SNP Report
Basic Infomation
| Name | rs2227290 dbSNP |
|---|---|
| Location | chr:20,44176142 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696501 | 0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.80[ASN][1000 genomes] |
| rs1487325 | 0.87[MEX][hapmap] |
| rs2171371 | 0.87[MEX][hapmap] |
| rs2235584 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2272961 | 0.87[MEX][hapmap] |
| rs6065823 | 0.82[MEX][hapmap] |
| rs6073768 | 0.87[MEX][hapmap] |
| rs6073825 | 0.87[MEX][hapmap] |
| rs6073834 | 0.87[MEX][hapmap] |
| rs6073846 | 0.87[MEX][hapmap] |
| rs6073862 | 0.87[MEX][hapmap] |
| rs6104285 | 0.87[MEX][hapmap] |
| rs6104293 | 0.87[MEX][hapmap] |
| rs6130897 | 0.87[MEX][hapmap] |
| rs714595 | 0.87[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EPPIN | Proximal transcriptional regulation |
| EPPIN-WFDC6 | Proximal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014