SNP Report

Basic Infomation

Name	rs16990238 dbSNP
Location	chr:20,44124594
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11696501	0.82[YRI][hapmap]
rs16990216	0.82[CHD][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap]
rs16990233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16990235	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206446	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[TSI][hapmap];0.84[ASN][1000 genomes]
rs4449202	1.00[CEU][hapmap]
rs6017582	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6017588	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6032241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6065826	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6065834	0.86[ASW][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs6073746	1.00[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.80[ASN][1000 genomes]
rs6073749	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6073750	1.00[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6073763	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs6073771	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6104182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73907980	0.87[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RPL5P2	Proximal transcriptional regulation
RPL5P2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)