SNP Report
Basic Infomation
| Name | rs6032242 dbSNP |
|---|---|
| Location | chr:20,44124954 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16990233 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16990235 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16990238 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2206446 | 0.84[ASN][1000 genomes] |
| rs6017582 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6017588 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6032241 | 0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6032243 | 0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6032244 | 0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6065826 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6073746 | 0.80[ASN][1000 genomes] |
| rs6073749 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6073750 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6073763 | 0.87[EUR][1000 genomes] |
| rs6073771 | 0.88[ASN][1000 genomes] |
| rs6104182 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73907980 | 0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPL5P2 | Proximal transcriptional regulation |
| RPL5P2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014