SNP Report
Basic Infomation
| Name | rs6073771 dbSNP |
|---|---|
| Location | chr:20,44145426 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696603 | 0.84[ASN][1000 genomes] |
| rs16990233 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs16990235 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs16990238 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2206446 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6017582 | 0.89[JPT][hapmap];1.00[YRI][hapmap] |
| rs6032241 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6032242 | 0.88[ASN][1000 genomes] |
| rs6032243 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6032244 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6065834 | 0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes] |
| rs6073746 | 0.89[JPT][hapmap] |
| rs6073750 | 0.89[JPT][hapmap];0.83[YRI][hapmap] |
| rs6073772 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6104182 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73127344 | 0.82[AFR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT3 | Proximal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014