SNP Report
Basic Infomation
| Name | rs16990216 dbSNP |
|---|---|
| Location | chr:20,44098783 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16990235 | 0.87[CHD][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap] |
| rs16990238 | 0.82[CHD][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap] |
| rs1997745 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs2206446 | 0.81[CHD][hapmap];1.00[GIH][hapmap] |
| rs6017582 | 0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6017588 | 0.94[JPT][hapmap];0.89[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs6065819 | 0.82[AFR][1000 genomes] |
| rs6065826 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6073746 | 1.00[CEU][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6073749 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6073750 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6073752 | 0.96[AFR][1000 genomes] |
| rs6073763 | 0.88[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap] |
| rs6073772 | 0.87[JPT][hapmap] |
| rs6104182 | 0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap] |
| rs7262887 | 0.94[AFR][1000 genomes] |
| rs73907980 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC2 | Proximal transcriptional regulation |
| PIGT | Distal transcriptional regulation |
| ENSG00000268111 | RNA binding protein mediated regulation |
| WFDC2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014