SNP Report

Basic Infomation

Name	rs4812909 dbSNP
Location	chr:20,44167244
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11696176	0.92[AMR][1000 genomes]
rs1487325	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2171371	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2272961	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6065823	0.85[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes]
rs6065827	0.92[AMR][1000 genomes]
rs6073759	0.92[AMR][1000 genomes]
rs6073768	1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6073774	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6073784	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6073825	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6073833	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6073834	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6073846	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6073849	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6073862	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs6094184	0.85[ASN][1000 genomes]
rs6104252	0.85[ASN][1000 genomes]
rs6104285	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6104291	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6104293	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6104298	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6130846	0.91[AMR][1000 genomes]
rs6130855	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6130865	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6130897	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs714595	0.81[CHB][hapmap];0.90[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000232135	Proximal transcriptional regulation
PIGT	Distal transcriptional regulation
WFDC6	RNA binding protein mediated regulation
EPPIN	RNA binding protein mediated regulation
EPPIN-WFDC6	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)