SNP Report
Basic Infomation
| Name | rs6130865 dbSNP |
|---|---|
| Location | chr:20,44211845 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696176 | 0.81[AMR][1000 genomes] |
| rs11696685 | 0.80[ASN][1000 genomes] |
| rs1487325 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2171371 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2272961 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4812909 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6065827 | 0.81[AMR][1000 genomes] |
| rs6073759 | 0.81[AMR][1000 genomes] |
| rs6073768 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6073774 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6073784 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6073825 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6094184 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6104252 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6104257 | 0.87[AMR][1000 genomes] |
| rs6104285 | 0.80[ASN][1000 genomes] |
| rs6124722 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC8 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014