SNP Report

Basic Infomation

Name	rs2904981 dbSNP
Location	chr:11,65003026
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1195733	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1633466	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1783486	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1858783	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1877450	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs239257	0.96[ASN][1000 genomes]
rs239261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2904966	0.85[CEU][hapmap]
rs2904979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2904980	0.86[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2904983	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904984	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904985	0.86[EUR][1000 genomes]
rs2904986	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957110	0.87[AFR][1000 genomes]
rs2957111	1.00[ASN][1000 genomes]
rs3015997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3016000	0.80[EUR][1000 genomes]
rs3016001	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3016002	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs482842	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs487568	0.81[EUR][1000 genomes]
rs488289	0.80[EUR][1000 genomes]
rs499027	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs507005	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs526502	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs554122	0.86[CEU][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs560097	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs592050	0.87[CEU][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs611910	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs612392	0.85[CEU][hapmap]
rs620427	0.85[CEU][hapmap]
rs625427	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs626802	0.86[CEU][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6591180	1.00[CHB][hapmap]
rs667341	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs668735	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs673147	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs676573	0.86[CEU][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs689288	0.85[CEU][hapmap]
rs7116674	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
SYVN1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)