SNP Report

Basic Infomation

Name	rs487568 dbSNP
Location	chr:11,65039241
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1152611	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1195733	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12269727	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1633466	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1783486	0.81[EUR][1000 genomes]
rs1858783	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28781278	0.89[AMR][1000 genomes]
rs2904966	0.83[ASN][1000 genomes]
rs2904967	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2904981	0.81[EUR][1000 genomes]
rs2904986	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3016000	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3016001	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4149813	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs482842	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487989	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488289	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs499027	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs503277	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs506280	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs507005	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509303	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs526502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs542142	0.83[ASN][1000 genomes]
rs554122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs560097	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs603286	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs611910	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625427	0.81[EUR][1000 genomes]
rs626555	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs626802	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs630055	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs636928	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs655433	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs667341	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs668735	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673147	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676114	0.83[ASN][1000 genomes]
rs676573	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8638	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
POLA2	Distal transcriptional regulation
CDC42EP2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)