SNP Report
Basic Infomation
| Name | rs28781278 dbSNP |
|---|---|
| Location | chr:11,65100137 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1152611 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12269727 | 0.92[EUR][1000 genomes] |
| rs1858783 | 0.92[AMR][1000 genomes] |
| rs2904966 | 0.86[ASN][1000 genomes] |
| rs2904967 | 0.91[EUR][1000 genomes] |
| rs2904986 | 0.85[AMR][1000 genomes] |
| rs4149813 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs487397 | 0.81[ASN][1000 genomes] |
| rs487568 | 0.89[AMR][1000 genomes] |
| rs487989 | 0.86[EUR][1000 genomes] |
| rs488289 | 0.89[AMR][1000 genomes] |
| rs503277 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs506280 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs507005 | 0.92[AMR][1000 genomes] |
| rs509303 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs526502 | 0.89[AMR][1000 genomes] |
| rs542142 | 0.86[ASN][1000 genomes] |
| rs554122 | 0.89[AMR][1000 genomes] |
| rs592050 | 0.89[AMR][1000 genomes] |
| rs603286 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs620427 | 0.94[ASN][1000 genomes] |
| rs626555 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs630055 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs636928 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs650056 | 0.81[ASN][1000 genomes] |
| rs655433 | 0.87[EUR][1000 genomes] |
| rs668735 | 0.92[AMR][1000 genomes] |
| rs676114 | 0.86[ASN][1000 genomes] |
| rs8638 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DPF2 | Proximal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| SLC25A45 | Distal transcriptional regulation |
| TIGD3 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014