SNP Report

Basic Infomation

Name	rs4149813 dbSNP
Location	chr:11,65082673
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1152611	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1195733	0.82[EUR][1000 genomes]
rs12269727	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1633466	0.81[EUR][1000 genomes]
rs1858783	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28781278	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2904967	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2904986	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3016000	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs482842	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs487568	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs487989	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs488289	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs499027	0.84[EUR][1000 genomes]
rs503277	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs506280	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs507005	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs509303	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs526502	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs554122	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs560097	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs592050	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs603286	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs611910	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs626555	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs626802	0.83[EUR][1000 genomes]
rs630055	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs636928	0.92[EUR][1000 genomes]
rs655433	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs667341	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs668735	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs673147	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs676573	0.84[EUR][1000 genomes]
rs8638	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDC42EP2	Proximal transcriptional regulation
FAT1	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
CDC42EP2	Distal transcriptional regulation
SLC25A45	Distal transcriptional regulation
DPF2	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation
SPDYC	Distal transcriptional regulation
EHBP1L1	Distal transcriptional regulation
ENSG00000269018	Distal transcriptional regulation
KCNK7	Distal transcriptional regulation
NEAT1	Distal transcriptional regulation
EHD1	Distal transcriptional regulation
TIGD3	Distal transcriptional regulation
LTBP3	Distal transcriptional regulation
NCL	Distal transcriptional regulation
CDC42EP2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)