SNP Report

Basic Infomation

Name	rs2904986 dbSNP
Location	chr:11,65031221
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1152611	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1195733	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12269727	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1633466	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1783486	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1858783	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28781278	0.85[AMR][1000 genomes]
rs2904967	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2904979	0.83[ASN][1000 genomes]
rs2904980	0.83[ASN][1000 genomes]
rs2904981	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2904983	0.83[ASN][1000 genomes]
rs2957111	0.83[ASN][1000 genomes]
rs3015997	0.83[ASN][1000 genomes]
rs3016000	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3016001	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4149813	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs482842	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs487397	0.83[ASN][1000 genomes]
rs487568	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs487989	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs488289	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs499027	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs503277	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs506280	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs507005	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs509303	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs526502	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554122	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560097	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs592050	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603286	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs611910	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs625427	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs626555	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs626802	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630055	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs636928	0.86[EUR][1000 genomes]
rs650056	0.83[ASN][1000 genomes]
rs655433	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs667341	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs668735	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs673147	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs676573	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8638	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
POLA2	Proximal transcriptional regulation
FAU	Distal transcriptional regulation
MRPL49	Distal transcriptional regulation
DPF2	Distal transcriptional regulation
ENSG00000255173	Distal transcriptional regulation
ZNHIT2	Distal transcriptional regulation
CDC42EP2	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
ENSG00000254614	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)