SNP Report

Basic Infomation

Name	rs3016001 dbSNP
Location	chr:11,65008771
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1195733	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1212391	0.81[AFR][1000 genomes]
rs1633466	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1783486	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858783	0.82[EUR][1000 genomes]
rs1877450	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs239257	0.91[ASN][1000 genomes]
rs239261	0.89[ASN][1000 genomes]
rs2904979	0.96[ASN][1000 genomes]
rs2904980	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904981	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904982	0.81[ASN][1000 genomes]
rs2904983	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904984	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2904985	0.85[EUR][1000 genomes]
rs2904986	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957111	0.96[ASN][1000 genomes]
rs3015994	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3015997	0.96[ASN][1000 genomes]
rs3016000	0.81[EUR][1000 genomes]
rs3016002	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs482842	0.81[EUR][1000 genomes]
rs487568	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs488289	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs499027	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs507005	0.82[EUR][1000 genomes]
rs526502	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs554122	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs560097	0.81[EUR][1000 genomes]
rs592050	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs611910	0.81[EUR][1000 genomes]
rs625427	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs626802	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs667341	0.81[EUR][1000 genomes]
rs668735	0.82[EUR][1000 genomes]
rs673147	0.82[EUR][1000 genomes]
rs676573	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MALAT1	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)