SNP Report

Basic Infomation

Name	rs2904984 dbSNP
Location	chr:11,65005886
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1195733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1633466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1783486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1858783	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1877450	0.90[ASN][1000 genomes]
rs239257	0.92[ASN][1000 genomes]
rs239261	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2904967	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs2904979	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2904980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904981	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904982	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2904983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904985	0.81[EUR][1000 genomes]
rs2957110	0.82[AFR][1000 genomes]
rs2957111	0.96[ASN][1000 genomes]
rs3015997	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3016001	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3016002	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs482842	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs487989	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs503277	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs506280	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs507005	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs509303	0.90[CEU][hapmap]
rs526502	0.91[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs554122	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs560097	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs592050	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs611910	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs625427	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs626555	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs626802	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs630055	0.90[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs655433	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs667341	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs668735	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs673147	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs676573	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7116674	1.00[CHB][hapmap]
rs8638	0.88[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
POLA2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)