SNP Report

Basic Infomation

Name	rs239261 dbSNP
Location	chr:11,64993357
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1195733	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1633466	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1783486	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs1858783	0.80[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs1877450	0.91[ASN][1000 genomes]
rs239257	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2904966	0.88[CEU][hapmap];0.91[GIH][hapmap]
rs2904967	0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap]
rs2904979	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2904980	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2904981	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2904982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs2904983	0.93[ASN][1000 genomes]
rs2904984	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2957111	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3015997	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3016001	0.89[ASN][1000 genomes]
rs3016002	0.88[ASN][1000 genomes]
rs482842	0.80[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];0.81[YRI][hapmap]
rs487989	0.87[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap]
rs503277	1.00[JPT][hapmap]
rs506280	1.00[JPT][hapmap]
rs507005	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs509303	0.94[CHD][hapmap]
rs526502	0.89[CHD][hapmap];0.82[GIH][hapmap]
rs554122	0.80[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs560097	0.80[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap]
rs592050	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs611910	0.80[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap]
rs612392	0.84[ASW][hapmap];0.88[CEU][hapmap];0.88[MEX][hapmap];0.86[YRI][hapmap]
rs620427	0.82[ASW][hapmap];0.88[CEU][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap]
rs625427	0.93[ASN][1000 genomes]
rs626555	1.00[JPT][hapmap]
rs626802	0.80[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs630055	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs655433	1.00[JPT][hapmap]
rs6591180	0.84[YRI][hapmap]
rs667341	0.80[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap]
rs668735	0.80[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs673147	0.80[CEU][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap]
rs676114	0.94[CHD][hapmap];0.91[GIH][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.86[YRI][hapmap]
rs676573	1.00[JPT][hapmap]
rs689288	0.88[CEU][hapmap];0.88[MEX][hapmap]
rs7116674	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap]
rs8638	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SLC22A20	Distal transcriptional regulation
LTBP3	Distal transcriptional regulation
SYVN1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)