SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1858783	0.83[CHD][hapmap]
rs239261	0.88[CEU][hapmap];0.88[MEX][hapmap]
rs2904966	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs2904967	0.83[CHD][hapmap];0.86[MEX][hapmap]
rs2904979	0.88[CEU][hapmap];0.88[MEX][hapmap]
rs2904981	0.85[CEU][hapmap]
rs2904982	0.85[CEU][hapmap]
rs3015997	0.88[CEU][hapmap];0.88[MEX][hapmap]
rs482842	0.83[CHD][hapmap]
rs487989	0.88[MEX][hapmap]
rs509303	0.83[CHD][hapmap]
rs554122	0.83[CHD][hapmap]
rs560097	0.83[CHD][hapmap]
rs611910	0.83[CHD][hapmap]
rs612392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620427	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap]
rs626802	0.83[CHD][hapmap]
rs630055	0.83[CHD][hapmap]
rs6591180	0.84[YRI][hapmap]
rs668735	0.83[CHD][hapmap]
rs676114	0.88[CEU][hapmap];0.83[CHD][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
TIGD3	Proximal transcriptional regulation
DPF2	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation
CDC42EP2	Distal transcriptional regulation
TIGD3	Distal transcriptional regulation
DPF2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)