SNP Report

Basic Infomation

Name	rs620427 dbSNP
Location	chr:11,65094583
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1783486	0.89[CHD][hapmap];0.85[GIH][hapmap]
rs1858783	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs239261	0.82[ASW][hapmap];0.88[CEU][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap]
rs28781278	0.94[ASN][1000 genomes]
rs2904966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2904967	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap]
rs2904979	0.88[CEU][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap]
rs2904980	0.89[CHD][hapmap];0.85[GIH][hapmap]
rs2904981	0.85[CEU][hapmap]
rs2904982	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs3015997	0.88[CEU][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap]
rs3741386	1.00[CHB][hapmap]
rs482842	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs487397	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs487989	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap]
rs503277	1.00[CHB][hapmap]
rs506280	1.00[CHB][hapmap]
rs507005	1.00[CHB][hapmap]
rs509303	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[ASN][1000 genomes]
rs526502	1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap]
rs542142	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs551523	1.00[CHB][hapmap]
rs554122	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs560097	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs586768	0.84[LWK][hapmap]
rs592050	1.00[CHB][hapmap]
rs603286	0.81[ASN][1000 genomes]
rs611910	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs612392	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs626555	1.00[CHB][hapmap]
rs626802	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs630055	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs636928	0.94[ASN][1000 genomes]
rs650056	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs655433	1.00[CHB][hapmap]
rs6591180	1.00[YRI][hapmap]
rs667341	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap]
rs668735	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs673147	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap]
rs676114	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs676573	1.00[CHB][hapmap]
rs689288	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap]
rs7116674	0.94[CHD][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap]
rs8638	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
DPF2	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)