SNP Report
Basic Infomation
| Name | rs487397 dbSNP |
|---|---|
| Location | chr:11,65022077 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs28781278 | 0.81[ASN][1000 genomes] |
| rs2904966 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2904982 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2904986 | 0.83[ASN][1000 genomes] |
| rs499027 | 0.83[ASN][1000 genomes] |
| rs526502 | 0.83[ASN][1000 genomes] |
| rs542142 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs554122 | 0.83[ASN][1000 genomes] |
| rs592050 | 0.83[ASN][1000 genomes] |
| rs620427 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs626802 | 0.83[ASN][1000 genomes] |
| rs636928 | 0.92[ASN][1000 genomes] |
| rs650056 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs676114 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs676573 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VPS51 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014