SNP Report
Basic Infomation
| Name | rs3016002 dbSNP |
|---|---|
| Location | chr:11,65003197 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1195733 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1633466 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1783486 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1877450 | 0.88[ASN][1000 genomes] |
| rs239257 | 0.90[ASN][1000 genomes] |
| rs239261 | 0.88[ASN][1000 genomes] |
| rs2904979 | 0.94[ASN][1000 genomes] |
| rs2904980 | 0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2904981 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2904983 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2904984 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2957110 | 0.82[AFR][1000 genomes] |
| rs2957111 | 0.94[ASN][1000 genomes] |
| rs3015997 | 0.94[ASN][1000 genomes] |
| rs3016001 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs625427 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SYVN1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014