SNP Report
Basic Infomation
| Name | rs2753403 dbSNP |
|---|---|
| Location | chr:14,68913185 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10454686 | 0.85[CEU][hapmap] |
| rs10747299 | 0.85[ASN][1000 genomes] |
| rs11158737 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs11158742 | 1.00[JPT][hapmap] |
| rs11845050 | 0.85[LWK][hapmap] |
| rs12435006 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12588330 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12889206 | 0.86[MEX][hapmap] |
| rs12897307 | 1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17755674 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1956538 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2064910 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2331703 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2331704 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2525507 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2842320 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3784118 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs3966077 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs4899241 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs4899243 | 1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs4902571 | 0.90[CEU][hapmap];0.86[MEX][hapmap] |
| rs4902578 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4902580 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4902581 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4902582 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902587 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902588 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902589 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6573834 | 0.86[MEX][hapmap] |
| rs66597987 | 0.80[EUR][1000 genomes] |
| rs7140827 | 0.82[EUR][1000 genomes] |
| rs7145422 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7150454 | 0.86[MEX][hapmap] |
| rs8003606 | 1.00[CHB][hapmap] |
| rs8009876 | 0.86[MEX][hapmap] |
| rs8013026 | 0.85[CEU][hapmap] |
| rs8015516 | 0.90[CEU][hapmap] |
| rs8019592 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs9323510 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9743896 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs975422 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| PPIAP6 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014