SNP Report
Basic Infomation
| Name | rs10454686 dbSNP |
|---|---|
| Location | chr:14,68839917 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10132981 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11158737 | 0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12589872 | 0.84[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17755674 | 0.90[CEU][hapmap] |
| rs1956538 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1964854 | 0.95[EUR][1000 genomes] |
| rs2064910 | 0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2331703 | 0.84[CEU][hapmap] |
| rs2331704 | 0.85[CEU][hapmap] |
| rs2525507 | 0.85[CEU][hapmap] |
| rs2753403 | 0.85[CEU][hapmap] |
| rs2842320 | 0.85[CEU][hapmap] |
| rs2877475 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3784118 | 0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3966077 | 0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4902571 | 0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4902578 | 0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4902587 | 0.85[CEU][hapmap] |
| rs4902588 | 0.85[CEU][hapmap] |
| rs4902589 | 0.85[CEU][hapmap] |
| rs7145422 | 0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8013026 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8015516 | 0.94[CEU][hapmap];0.99[EUR][1000 genomes] |
| rs9323510 | 0.85[CEU][hapmap];0.88[AMR][1000 genomes] |
| rs975422 | 0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACTN1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014