SNP Report
Basic Infomation
| Name | rs2877475 dbSNP |
|---|---|
| Location | chr:14,68823119 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10132981 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10454686 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11158737 | 0.88[AMR][1000 genomes] |
| rs12589872 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1956538 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1964854 | 0.88[EUR][1000 genomes] |
| rs2064910 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3966077 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4902571 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4902578 | 0.85[AMR][1000 genomes] |
| rs7145422 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8013026 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs8015516 | 0.91[EUR][1000 genomes] |
| rs9323510 | 0.83[AMR][1000 genomes] |
| rs975422 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014