SNP Report
Basic Infomation
| Name | rs4902582 dbSNP |
|---|---|
| Location | chr:14,68893008 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10438157 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10747299 | 0.85[ASN][1000 genomes] |
| rs11158737 | 0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12435006 | 0.85[ASN][1000 genomes] |
| rs12588330 | 0.85[ASN][1000 genomes] |
| rs12897307 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12897678 | 0.84[EUR][1000 genomes] |
| rs17755674 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1956538 | 0.84[ASN][1000 genomes] |
| rs2331703 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2331704 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2525507 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2753403 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2842320 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3784118 | 0.84[ASN][1000 genomes] |
| rs3966077 | 0.82[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4902578 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902580 | 0.85[ASN][1000 genomes] |
| rs4902581 | 0.85[ASN][1000 genomes] |
| rs4902587 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902588 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902589 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7145422 | 0.84[ASN][1000 genomes] |
| rs9323510 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9323511 | 0.84[AMR][1000 genomes] |
| rs9743896 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPIAP6 | Proximal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014