SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12889206	0.87[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570106	0.87[ASW][hapmap];0.93[CEU][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1810623	0.94[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208397	0.90[GIH][hapmap]
rs2331703	1.00[MEX][hapmap]
rs2331704	1.00[MEX][hapmap]
rs2525507	1.00[MEX][hapmap]
rs2588827	0.85[MEX][hapmap]
rs2753403	0.86[MEX][hapmap]
rs2842320	0.86[MEX][hapmap]
rs4899243	0.85[MEX][hapmap]
rs4902564	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4902567	0.94[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902571	1.00[MEX][hapmap]
rs7150454	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160221	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72727425	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003738	0.94[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008961	0.90[GIH][hapmap]
rs8009876	1.00[MEX][hapmap]
rs8015516	0.86[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000240210	Proximal transcriptional regulation
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)