SNP Report
Basic Infomation
| Name | rs4899241 dbSNP |
|---|---|
| Location | chr:14,68864311 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747299 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11158737 | 1.00[JPT][hapmap] |
| rs11158742 | 1.00[JPT][hapmap] |
| rs12435006 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12588330 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12897307 | 1.00[JPT][hapmap] |
| rs17755674 | 1.00[JPT][hapmap] |
| rs1956538 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2064910 | 1.00[JPT][hapmap] |
| rs2331703 | 0.85[CHD][hapmap];0.88[GIH][hapmap] |
| rs2331704 | 0.85[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap] |
| rs2525507 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs2753403 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs2842320 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs3784118 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs3966077 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4899243 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs4902578 | 1.00[JPT][hapmap] |
| rs4902580 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4902581 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4902587 | 1.00[JPT][hapmap] |
| rs4902588 | 1.00[JPT][hapmap] |
| rs4902589 | 1.00[JPT][hapmap] |
| rs7145422 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7152152 | 0.85[GIH][hapmap] |
| rs7154175 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs8003606 | 1.00[CHB][hapmap] |
| rs8013184 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8019592 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9323510 | 1.00[JPT][hapmap] |
| rs975422 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014