SNP Report
Basic Infomation
| Name | rs27300 dbSNP |
|---|---|
| Location | chr:5,96363407 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 137)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10038651 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10044354 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10051637 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10058476 | 0.88[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs10061936 | 0.82[ASN][1000 genomes] |
| rs10069361 | 0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes] |
| rs10071975 | 0.85[CEU][hapmap] |
| rs10077945 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1046395 | 0.81[EUR][1000 genomes] |
| rs1046396 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10476696 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1056893 | 0.88[ASW][hapmap];0.82[CEU][hapmap];0.80[LWK][hapmap];0.80[MKK][hapmap] |
| rs1216565 | 0.81[CEU][hapmap];0.85[YRI][hapmap] |
| rs1216566 | 0.80[EUR][1000 genomes] |
| rs1216567 | 0.80[EUR][1000 genomes] |
| rs1216571 | 0.80[EUR][1000 genomes] |
| rs12716486 | 0.85[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs13170029 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs13358339 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1363907 | 0.85[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap] |
| rs1363974 | 0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1423357 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1423566 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1477364 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1544777 | 0.89[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs18059 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1820149 | 0.83[AFR][1000 genomes] |
| rs187265 | 0.82[CEU][hapmap] |
| rs2042385 | 0.82[CEU][hapmap] |
| rs2113189 | 0.83[CEU][hapmap] |
| rs2161548 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2161657 | 0.82[CEU][hapmap] |
| rs2161658 | 0.82[CEU][hapmap] |
| rs2255546 | 0.88[ASW][hapmap];0.82[CEU][hapmap];0.80[LWK][hapmap];0.80[MKK][hapmap] |
| rs2255633 | 0.82[CEU][hapmap] |
| rs2255634 | 0.82[CEU][hapmap] |
| rs2255637 | 0.82[CEU][hapmap] |
| rs2287988 | 0.88[ASW][hapmap];0.82[CEU][hapmap];0.80[LWK][hapmap];0.80[MKK][hapmap] |
| rs2351010 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2432141 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2432142 | 0.80[ASN][1000 genomes] |
| rs248215 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs251344 | 0.82[CEU][hapmap] |
| rs2548224 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2548516 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2548523 | 0.82[CEU][hapmap] |
| rs2548524 | 0.82[CEU][hapmap] |
| rs2548527 | 0.82[CEU][hapmap] |
| rs2548529 | 0.85[JPT][hapmap] |
| rs2548530 | 0.89[CEU][hapmap] |
| rs2548532 | 0.84[CEU][hapmap] |
| rs2548533 | 0.88[ASW][hapmap];0.82[CEU][hapmap];0.80[LWK][hapmap];0.80[MKK][hapmap] |
| rs2548536 | 0.81[JPT][hapmap] |
| rs2548537 | 0.85[CEU][hapmap] |
| rs2548538 | 0.81[CEU][hapmap] |
| rs2548539 | 0.81[CEU][hapmap] |
| rs2548540 | 0.82[CEU][hapmap] |
| rs2549781 | 0.82[CEU][hapmap] |
| rs2549782 | 0.88[ASW][hapmap];0.82[CEU][hapmap];0.80[LWK][hapmap];0.82[MKK][hapmap] |
| rs2549783 | 0.89[CEU][hapmap] |
| rs2549785 | 0.88[ASW][hapmap];0.82[CEU][hapmap];0.80[LWK][hapmap];0.80[MKK][hapmap] |
| rs2549790 | 0.80[CEU][hapmap];0.81[JPT][hapmap] |
| rs2549791 | 0.82[CEU][hapmap] |
| rs2549794 | 0.89[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap] |
| rs2549795 | 0.88[ASW][hapmap];0.82[CEU][hapmap];0.80[LWK][hapmap];0.80[MKK][hapmap] |
| rs2549796 | 0.82[CEU][hapmap] |
| rs2549797 | 0.88[ASW][hapmap];0.82[CEU][hapmap];0.80[LWK][hapmap];0.80[MKK][hapmap] |
| rs2617442 | 0.80[JPT][hapmap] |
| rs2617447 | 0.88[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs27289 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs27290 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs27293 | 0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs27294 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs27295 | 0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs27296 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs27298 | 0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs27299 | 0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs27306 | 0.89[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs27307 | 0.89[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs27397 | 0.85[CEU][hapmap] |
| rs27436 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs27613 | 0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2762 | 0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs27621 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs27659 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs27660 | 0.90[EUR][1000 genomes] |
| rs27711 | 0.89[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs27712 | 0.89[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs27747 | 0.85[CEU][hapmap] |
| rs27993 | 0.89[CEU][hapmap];0.85[CHD][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs27998 | 0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2910686 | 1.00[CEU][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs2910787 | 0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes] |
| rs2910788 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2910789 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2910792 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2911134 | 0.85[JPT][hapmap] |
| rs2927609 | 0.88[CEU][hapmap] |
| rs31398 | 0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3797796 | 0.92[CEU][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs38029 | 0.90[EUR][1000 genomes] |
| rs38031 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs38032 | 0.84[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs38033 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs38034 | 0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.81[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs38035 | 0.85[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs38036 | 0.85[CEU][hapmap] |
| rs38038 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs38039 | 0.89[EUR][1000 genomes] |
| rs38040 | 0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs38041 | 0.85[CEU][hapmap] |
| rs38043 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs38044 | 0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3849749 | 0.89[CEU][hapmap] |
| rs3849750 | 0.82[CEU][hapmap] |
| rs3909451 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs39602 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4092590 | 0.81[JPT][hapmap] |
| rs42983 | 0.82[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs430827 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4360063 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6556942 | 0.84[CEU][hapmap] |
| rs6870825 | 0.82[ASN][1000 genomes] |
| rs6871162 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6887500 | 0.85[EUR][1000 genomes] |
| rs7700332 | 0.82[CEU][hapmap] |
| rs7703341 | 0.85[EUR][1000 genomes] |
| rs7713127 | 0.85[CEU][hapmap] |
| rs7716222 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7719705 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs7722694 | 0.81[AFR][1000 genomes] |
| rs7726445 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7731592 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7733312 | 0.81[EUR][1000 genomes] |
| rs7736466 | 0.85[CEU][hapmap] |
| rs9127 | 0.81[CEU][hapmap] |
| rs9314181 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RIOK2 | Distal transcriptional regulation |
| ENSG00000251513 | Distal transcriptional regulation |
| LNPEP | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 17)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014