SNP Report
Basic Infomation
| Name | rs7733312 dbSNP |
|---|---|
| Location | chr:5,96285821 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 94)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10038651 | 0.88[EUR][1000 genomes] |
| rs10044354 | 0.88[EUR][1000 genomes] |
| rs10051637 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10058476 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10069361 | 0.80[EUR][1000 genomes] |
| rs10077945 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1046395 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1046396 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10476696 | 0.88[EUR][1000 genomes] |
| rs1216566 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1216567 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1216571 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13170029 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs13358339 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1363907 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1363908 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1363974 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1363976 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1423357 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1423566 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1477364 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1544777 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1820148 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2161548 | 0.88[EUR][1000 genomes] |
| rs2351010 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2351011 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2432141 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2432142 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs251339 | 0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs251340 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs251341 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs251343 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2548224 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2548226 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2548516 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2548530 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2548532 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2549783 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2549794 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2617435 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2617439 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2617447 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs27289 | 0.85[EUR][1000 genomes] |
| rs27290 | 0.85[EUR][1000 genomes] |
| rs27293 | 0.85[EUR][1000 genomes] |
| rs27295 | 0.85[EUR][1000 genomes] |
| rs27300 | 0.81[EUR][1000 genomes] |
| rs27306 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs27307 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs27436 | 0.86[EUR][1000 genomes] |
| rs2762 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs27659 | 0.86[EUR][1000 genomes] |
| rs27660 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs27711 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs27712 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs27993 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs27998 | 0.81[EUR][1000 genomes] |
| rs2859491 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2910686 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2910687 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2910787 | 0.80[EUR][1000 genomes] |
| rs2910788 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2910789 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2910792 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2910793 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2927608 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2927609 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3797796 | 0.87[EUR][1000 genomes] |
| rs38029 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs38031 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs38032 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs38033 | 0.89[EUR][1000 genomes] |
| rs38034 | 0.89[EUR][1000 genomes] |
| rs38038 | 0.86[EUR][1000 genomes] |
| rs38039 | 0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs38043 | 0.86[EUR][1000 genomes] |
| rs38044 | 0.86[EUR][1000 genomes] |
| rs3849749 | 0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3909451 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs39602 | 0.83[EUR][1000 genomes] |
| rs4360063 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs55770741 | 0.81[EUR][1000 genomes] |
| rs6556942 | 0.82[EUR][1000 genomes] |
| rs6859168 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6870825 | 0.80[EUR][1000 genomes] |
| rs6871162 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6873866 | 0.84[AMR][1000 genomes] |
| rs6887500 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7703341 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7716222 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7719705 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7726445 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7731592 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9314181 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LNPEP | Distal transcriptional regulation |
| ENSG00000247121 | Distal transcriptional regulation |
| LNPEP | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014