SNP Report
Name | rs1363907   dbSNP |
---|---|
Location | chr:5,96252803 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10038651 | 0.85[EUR][1000 genomes] |
rs10044354 | 0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes] |
rs10051637 | 0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10058476 | 0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10069361 | 0.83[CHD][hapmap] |
rs10077945 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs10434709 | 0.89[CEU][hapmap] |
rs1046395 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1046396 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10476696 | 0.85[EUR][1000 genomes] |
rs11135484 | 0.89[CEU][hapmap] |
rs1216566 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1216567 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1216571 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1230358 | 0.88[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap] |
rs12516666 | 0.89[CEU][hapmap] |
rs13167902 | 0.89[CEU][hapmap] |
rs13170029 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs13358339 | 0.85[EUR][1000 genomes] |
rs1363908 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1363974 | 0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes] |
rs1363976 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1423357 | 0.85[CEU][hapmap];0.85[EUR][1000 genomes] |
rs1423566 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1477364 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1544777 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1559355 | 0.89[CEU][hapmap] |
rs18059 | 0.81[CHD][hapmap];0.82[MEX][hapmap] |
rs1820148 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1974871 | 0.82[ASW][hapmap];0.85[CEU][hapmap];0.82[LWK][hapmap];0.84[YRI][hapmap] |
rs2113050 | 0.84[CEU][hapmap] |
rs2161548 | 0.85[CEU][hapmap];0.85[EUR][1000 genomes] |
rs2247650 | 0.85[CEU][hapmap] |
rs2278018 | 0.89[CEU][hapmap] |
rs2278019 | 0.89[CEU][hapmap] |
rs2351010 | 0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes] |
rs2351011 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2432141 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2432142 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs251339 | 0.85[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs251340 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs251341 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs251343 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2548224 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2548226 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2548516 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2548527 | 0.88[ASW][hapmap];0.92[YRI][hapmap] |
rs2548529 | 0.82[CEU][hapmap] |
rs2548530 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2548532 | 0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2549778 | 0.88[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap] |
rs2549783 | 0.96[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2549784 | 0.81[CEU][hapmap];0.86[YRI][hapmap] |
rs2549791 | 0.84[YRI][hapmap] |
rs2549794 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2617435 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs2617438 | 0.88[JPT][hapmap] |
rs2617439 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2617447 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs27289 | 0.83[EUR][1000 genomes] |
rs27290 | 0.85[CEU][hapmap];0.80[CHD][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes] |
rs27293 | 0.83[EUR][1000 genomes] |
rs27295 | 0.83[EUR][1000 genomes] |
rs27300 | 0.85[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap] |
rs27306 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes] |
rs27307 | 0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes] |
rs27436 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
rs27613 | 0.83[CHD][hapmap] |
rs2762 | 0.85[CEU][hapmap];0.82[CHD][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs27659 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
rs27660 | 0.88[EUR][1000 genomes] |
rs27711 | 0.93[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes] |
rs27712 | 0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes] |
rs27993 | 0.93[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes] |
rs2859491 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2910686 | 0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs2910687 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2910787 | 0.83[CHD][hapmap] |
rs2910788 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2910789 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2910792 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2910793 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2927608 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2927609 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3734015 | 0.89[CEU][hapmap] |
rs3797796 | 0.92[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes] |
rs38029 | 0.88[EUR][1000 genomes] |
rs38031 | 0.88[EUR][1000 genomes] |
rs38032 | 0.92[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs38033 | 0.85[CEU][hapmap];0.86[EUR][1000 genomes] |
rs38034 | 0.82[CEU][hapmap];0.82[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes] |
rs38038 | 0.83[EUR][1000 genomes] |
rs38039 | 0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs38040 | 0.83[CHD][hapmap] |
rs38042 | 0.85[CEU][hapmap] |
rs38043 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
rs38044 | 0.83[EUR][1000 genomes] |
rs3849749 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs3909451 | 0.85[CEU][hapmap];0.81[CHD][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes] |
rs39602 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes] |
rs4360063 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
rs4869313 | 0.81[EUR][1000 genomes] |
rs4869314 | 0.89[CEU][hapmap] |
rs55770741 | 0.84[EUR][1000 genomes] |
rs6556942 | 0.92[CEU][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes] |
rs6859168 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6871162 | 0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6873866 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs6887500 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs7703341 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs7716222 | 0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes] |
rs7719705 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7726445 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7731592 | 0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7733312 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs9127 | 0.92[CEU][hapmap] |
rs9314181 | 0.85[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000247121 | Distal transcriptional regulation |
ENSG00000247121 | RNA binding protein mediated regulation |
ERAP2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014