SNP Report

Basic Infomation

Name	rs27712 dbSNP
Location	chr:5,96364063
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 107)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10038651	0.85[EUR][1000 genomes]
rs10044354	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs10051637	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs10058476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10069361	0.83[CHD][hapmap]
rs10077945	0.81[EUR][1000 genomes]
rs10434709	0.85[CEU][hapmap]
rs1046395	0.88[EUR][1000 genomes]
rs1046396	0.83[EUR][1000 genomes]
rs10476696	0.85[EUR][1000 genomes]
rs11135484	0.85[CEU][hapmap]
rs1216566	0.87[EUR][1000 genomes]
rs1216567	0.87[EUR][1000 genomes]
rs1216571	0.87[EUR][1000 genomes]
rs1230358	0.83[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap]
rs12516666	0.85[CEU][hapmap]
rs13167902	0.85[CEU][hapmap]
rs13170029	0.83[EUR][1000 genomes]
rs13358339	0.85[EUR][1000 genomes]
rs1363907	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs1363908	0.86[EUR][1000 genomes]
rs1363974	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs1363976	0.84[EUR][1000 genomes]
rs1423357	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1423566	0.83[EUR][1000 genomes]
rs1477364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1544777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1559355	0.85[CEU][hapmap]
rs18059	0.81[CHD][hapmap];0.82[MEX][hapmap]
rs1820148	0.86[EUR][1000 genomes]
rs1974871	0.89[CEU][hapmap]
rs2161548	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2247650	0.82[CEU][hapmap]
rs2278018	0.85[CEU][hapmap]
rs2278019	0.85[CEU][hapmap]
rs2351010	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs2351011	0.86[EUR][1000 genomes]
rs2432141	0.82[EUR][1000 genomes]
rs251339	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs251340	0.86[EUR][1000 genomes]
rs251341	0.85[EUR][1000 genomes]
rs2548226	0.82[EUR][1000 genomes]
rs2548516	0.80[EUR][1000 genomes]
rs2548529	0.89[CHB][hapmap]
rs2548530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2548532	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2549778	0.83[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap]
rs2549783	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2549794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2617438	0.83[JPT][hapmap]
rs2617439	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2617447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs27289	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs27290	0.89[CEU][hapmap];0.81[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs27293	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs27295	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs27298	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs27300	0.89[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs27306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs27307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs27436	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs27613	0.83[CHD][hapmap]
rs2762	0.81[CEU][hapmap];0.83[CHD][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs27659	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs27660	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs27993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27998	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2859491	0.86[EUR][1000 genomes]
rs2910686	0.86[CEU][hapmap]
rs2910687	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2910787	0.83[CHD][hapmap]
rs2910788	0.83[EUR][1000 genomes]
rs2910789	0.83[EUR][1000 genomes]
rs2910792	0.83[EUR][1000 genomes]
rs2910793	0.86[EUR][1000 genomes]
rs2927609	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs3734015	0.85[CEU][hapmap]
rs3797796	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs38029	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs38031	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs38032	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs38033	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs38034	0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs38038	0.92[EUR][1000 genomes]
rs38039	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs38040	0.83[CHD][hapmap]
rs38042	0.82[CEU][hapmap]
rs38043	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs38044	0.91[EUR][1000 genomes]
rs3849749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs3909451	0.89[CEU][hapmap];0.81[CHD][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs39602	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs4360063	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs4869314	0.85[CEU][hapmap]
rs6556942	0.96[CEU][hapmap];0.94[JPT][hapmap]
rs6859168	0.84[EUR][1000 genomes]
rs6871162	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs6887500	0.83[EUR][1000 genomes]
rs7703341	0.83[EUR][1000 genomes]
rs7716222	0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs7719705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7726445	0.83[EUR][1000 genomes]
rs7731592	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs7733312	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9127	0.92[CEU][hapmap]
rs9314181	0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RIOK2	Distal transcriptional regulation
ENSG00000251513	Distal transcriptional regulation
LNPEP	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 13)

eQTL related gene	Source
WDR74	SCAN
ERAP2	seeQTL
ARTS-1	Pritchard
LRAP	Pritchard
ERAP2	SCAN
ERAP2	SCAN
LNPEP	SCAN
C5orf36	SCAN
ERAP2	GTEx
ERAP2	GTEx
ERAP2	GTEx
ERAP2	GTEx
ERAP2	GTEx